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Colloquia and talks



Institution / Company


05/10/2017 Dr. Christoph Bock CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, Vienna, Austria and Department of Laboratory Medicine, Medical University of Vienna, Vienna, Austria and Max Planck Institute for Informatics, Saarbrücken, Germany CRISPR screening with single-cell transcriptome readout establishes a high-throughput method for dissecting gene-regulatory mechanisms
01/23/2012 Dr. Julia Engelmann

Department of Statistical Bioinformatics, Institute for Functional Genomics, Regensburg

Predicting causal effects of stromal cell signals on hepatic cancer cells
01/23/2012 Dr. Christof Winter

Translational Oncogenomics Lab, Lund University, Schweden

How structural protein interactions and regulatory networks predict drug
targets and survival in pancreatic cancer
01/23/2012 Dr. Nicholas Furnham

European Bioinformatics Institute, Cambridge

Exploring the evolution of nevel protein functions within structurally
defined superfamilies
01/23/2012 Dr. Mareike Fischer

Center for Integrative Bioinformatics, Wien

Maximum Parsimony - new insights into an old method
01/23/2012 Dr. Barbara Hutter

Computational Oncology-Gruppe, German Cancer Reasearch Center, Heidelberg

Analysis of new generation sequencing data in computational oncology
01/23/2012 Dr. Dominic Rose

Chair for Bioinformatics, Universität Freiburg

Computational biology of non-coding RNAs
11/25/2009 Herrn Dr. Hauke Busch Freiburg Institute for Advanced Studies Using Time-Scale Separation of cellular processes to untangle biological complexity
10/28/2009 Dr. Jürgen Pahle University of Manchester How to quantify information transfer in signaling systems
06/24/2009 Prof. Eugene Myers Howard Hughes Medical Institute (HHMI),
Janelia Farms Research Campus, USA
Machine-Vision and Molecular Biology
06/24/2009 Dr. Christoph Bock Max-Planck Institute for Computer Science Epigenome analysis with bioinformatic methods and applications to cancer biomarker discovery
05/27/2009 Dr. Alice McHardy Max-Planck Institute for Computer Science Computational Methods for the Analysis of Metagenome Sequence Samples
05/06/2009 Dr. Mario Albrecht Max-Planck Institute for Computer Science Utilizing Network Data for Biological Research
06/05/2008 Ritchie, Dave University of Aberdeen Protein Docking and Molecular Shape Recognition using Polar Fourier Correlations
21/01/2008 Prof. Rolf Backofen Freiburg University, Chair for Bioinformatics Translational Control: Non-Coding RNAs and Alternative Splicing
24/10/2007 Prof. Gyan Bhanot

BioMaPS Institute and Biomedical Engineering, Rutgers University & Cancer Institute of New Jersey

What PCA and Consensus Ensemble Clustering reveal about Human Migrations
and Breast Cancer


14/06/2007 Park, Youngki Universität des Saarlandes

What do membrane protein structures tell us about their folding and thermodynamic stability?


Prof. Gregory Stephanopoulos

Massachusetts Institute of Technology (MIT) Laboratory for Metabolic Engineering and Bioinformatics, Chemical Engineering Department

Metabolic and Cell Engineering: Past Accomplishments and Potential in the Post Genomic Era

03/05/2007 Finn, Robert


Pfam and iPfam


Weichenberger, Christian

Universität Salzburg

Self-consistent Assignment of Asparagine and Glutamine Side-Chain Amide Rotamers

14/02/2007 Thomas, Roman MPI für Neurologische Forschung, Köln Translating cancer genomics into medicine


Weskamp, Nils

Universität Marburg

Structure-based Mapping of Protein Binding Pocket Space

17/01/2006 Bozek, Kazia


Modeling of Heterogenous Regulation in Bilogical Networks


Fröhler,  Sebastian


Logic- Based Information Integration and Machine Learning for Gene Regulation Prediction

14/12/2006 Prof. Karin Hauser Institut für Biophysik, Fachbereich Physik, Johann Wolfgang Goethe-Universität Frankfurt Proteins Studied by Electrostatic Calculations


Zacharias, Martin

International University Bremen

Computer simulation of biomolecules: The role of flexibility during molecular recognition


Prof. Dr. Andreas Burkovski Mikrobiologie, Universität Erlangen Stickstoffkontrolle bei Corynebakterien


Carlberg, Carsten


Bioinformatics and Systems Biology of Nuclear Receptor Signaling


Bahadur, Ranjit Institut de Biochimie et Biophysique Moléculaire et Cellulaire


Structural features of protein-protein recognition


Parthiban, Vijaya

Universität Köln

Factors Determining Protein Mutant Stability: Analysis and Application to Prediction

25/10/2006 Neduva, Victor EMBL Heidelberg


Predicting molecular details for protein interaction networks


Dr. Christoph Wittmann

Technische Biochemie, Universität des Saarlandes

From Microorganisms to Cell Factories - Systems Biotechnology for Design and Optimization of Production Strains


Schwede, Torsten

Universität Basel

SWISS- MODEL Server and Repository: Practical applications of automated large- scale comparative protein structure modeling


Dr. Andreas Tholey

Technische Biochemie - Functional Proteomics Group, Universität des Saarlandes

Mass Spectrometry in Functional Protein Analytics Basics and Applications in Biotechnology and Medicine


Dr. Tjerk P. Straatsma

Environmental Molecular Sciences Laboratory, Pacific Nothwest National Laboratory, Richland Washington

Scalable MD


Dr. Armin Ehrenreich

Institut für Mikrobiologie und Genetik, Universität Göttingen

Funktionelle Genomik biotechnologisch relevanter Organismen: Der Exoenzym-Produzent Bacillus licheniformis und das Essigsäure-Bakterium Gluconobacter oxydans


Schulz, Wolfgang Heinrich-Heine-Universität Düsseldorf Epigenetics in Prostate Cancer


Emig, Dorothea


DiAlign-T: Multiple Sequence Alignment


Dr. Peter Kolb

Dept. of Biochemistry, University of Zurich


Fragment-Based High Throughput Docking: Methodological Developments and Applications


Prof. Dr. An-Ping Zeng

TU Hamburg

Integrated Analysis of Genome-Wide Metabolic and Regulatory Networks and Functional Genomic Data

09/05/2006 Chen, Brian Rice University, Houston Texas Algorithms for Protein Function Prediction


Prof. Dr. Pavel Jungwirth

Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, Prague

Solvation of Ions at Aequeous Interfaces


Revesz, Peter   New Algorithms for the Genome Map Assembmly Problem


Cline, Melissa


Visualizing the effects of alternative splicing on protein interaction networks


Michael S. Roberts

University of Queensland, Australia

Maximum Flux - A Concept to Predict Skin Permeation


John Pugh

University of Cardiff, UK

Choosing the Right Predictors for Skin Permeation


Prof. Helmut Grubmüller

Max-Planck-Institute for Biophysical Chemistry, Göttingen

Force probe molecular dynamics of titin activation and bacteriorhodopsin extraction


Prof. Reinhard Krämer

Institut für Biochemie, Univ. Köln

Aminosäureexkretion und -aufnahme in Corynebacterium. glutamicum


Prof.Dr.Armen Mulkidjanian

Fachbereich Physik, Universität Osnabrück und dem Belozersky Institut für Physiko-Chemische Biologie der Lomonossov-Universität Moskau

Layering of surface water: Implications for physical and biological systems


Dr. Matthias Schneider

Universität Augsburg

Mechanically Activated Proteins in Acoustically Driven Microfluidic Systems


Dr. Martin Ginkel

Max-Planck-Institute for Dynamics of Complex Technical Systems in Magdeburg

Modeling cellular systems with ProMoT/Diva


Prof. Thomas Noll

Institut für Biotechnologie, Univ. Bielefeld

Auf dem Weg zur rationalen Bioprozessentwicklung mit Säugerzellen: von der Glukose-limitierten Perfusionskultur bis zur Stoffflussanalytik


Dr. Silvio Tosatto

Biocomputing GRUP, CRIBI Biotechnology Centry, University of Padua, Italy

Towards the reliable identification of accurate protein structures


Dr. Dirk Walther

Max-Planck-Institut für Molekulare Pflanzenphysiologie, Potsdam

Non-Invasive Discrimination of Rejection in Heart Transplant Recipients using Gene Expression Profiling


Dr. Benno Schwikowski

Research on Systems Biology, Institut Pasteur, Paris

Analyzing heterogeneous large data sets in molecular biology: Approaches to data integration and the


Prof. Warren Hunt

Department of Computer Sciences, Universität Texas

Phylogenetic Conensus Analysis


Dr. Bert de Groot

MPI für biophys. Chemie, Computational Biomolecular Dynamics Group, Götttingen

Model bias in NMR structure ensembles - a minimal force field approach for NOE based structure determination


Prof. Jung-Hsin Lin

School of Pharmacy, National Taiwan University

Dynamics, Conformational Transition and Drug Interactions of P-glycoprotein upon ATP binding


Dr. Arief Budi Witarto

Research Center for Biotechnology, Indonesian Institute of Science

Protein Engineering of Beta-Propeller Proteins


Prof. Ulrich Baumann

Department of Chemistry & Biochemistry, University of Berne, Switzerland

The Birth and Death of Proteins: Structural Aspects of Translation Initiation and Protein Degradation


Prof. Dr. Helmut Schwab

Institut für Molekulare Biotechnologie, TU Graz

Improving and inverting enantioselectivity of an esterase by enzyme engineering


Dr. Jean-Marc Strub

Laboratoire de Spectrometrie de Masse Bio-Organique, ECPM Strasbourg, France

Proteomic Approaches in Biotechnological and Pharmaceutical Research


Prof. Dr. Christoph Syldatk

Technische Biologie, Universität Karlsruhe

Enzymatische Synthese nichtproteinogener D- und L-Aminosäuren ausgehend von D,L-monosubstituierten Hydantoinen


Weiler, Gabriele


Computing complete gene structures


Eggle, Daniela


Genome- wide analysis of growth- phase dependent genes in Stretomyces coelicolor


PhD Dr. Ursula Rinas

Gesellschaft für Biotechnologische Forschung, Braunschweig

Modern 'omics meets old-fashioned cell physiology - tools to understand protein producing E. coli cells


Daniele Narzi

University of Rome

Molecular Dynamics Simulations of Protein Folding


Charissi, Anna


Pattern Recognition: OCR of Handwritten Characters


Pal, Csaba

EMBL Heidelberg

Adaptive evolution of metabolic networks


Georgii, Elisabeth


Quantitative association rules for biological data


Antezana, Erick


The aMAZE LightBench: a web interface to a relational database of cellular processes


Yalak, Garif


Analysis of mutations in the death domains, death effector domains, caspase recruitment domains, and pyrin domains


Prof. Dr. Gene Myers

Faculty of Computer Science, University of California, Berkeley

Whole Genome Sequencing, Comparative Genomics, and Systems Biology


Dr. Dirk Schneider

Institut für Biochemie und Molekularbiologie, Universität Freiburg

Specificity and promiscuity in transmembrane helix interactions


Prof. John Pugh

Cardiff University

Modelling enhancement of skin absorption. Comparison of model and non-model based predictions.


Sotriffer, Christoph

Universität Marburg

Simultaneous docking to multiple targets and derivation of novel scoring functions


Dr. Ralf Krüger

Zentrale Spektroskopie, Deutsches Krebs-forschungszentrum (DKFZ), Heidelberg

Element-Massenspektrometrie von Phosphoproteinen mit LC-ICP-MS und Laserablations-ICP-MS


Michael Bannwarth

Institut für organische Chemie und Biochemie,

Universität Freiburg

Kristallstruktur der Pyranose 2-Oxidase aus dem Weißfäulepilz Peniophora sp.


Prof. Dr. Jörn Walter

Lehrstuhl für Genetik, UdS

Epigenetics and epigenomics - coding and decoding of genetic information


Prof. Dr. Roland Ulber

Bioverfahrenstechnik, Universität Kaiserslautern

Isolierung mariner Enzyme zum Einsatz in Biotransformation und Bioanalyse


Prof.Dr.Axel Scheidig

Zentrum für Bioinformatik, UdS

Structure based ligand design - a case study on the DNA methyltransferase MTaqI


Dr. Lenne, Pierre-Francois

Institut Fresnel, Marseille, Frankreich

Dynamic Molecular Confinement in Living Cell Membranes


Zang, Klaus

Universtät des Saarlandes

Das Meningeom: Ein zytogenisches Modell für klonale Entwicklungen in Tumoren des Menschen


Dr. Christian Freud

Forschungszentrum für molekulare Pharmakologie, FU Berlin

Recognition of proline-rich sequences by the GYF domain


Prof. Rolf Müller

Pharmaz. Biotechnologie, UdS

The Impact of Bacterial Genomics on Natural Product Research - Myxobacteria as Metabolite Factories


Apaydin, Serkan

Stanford University

Stochachstic Roadmap Simulation: An Efficient Representation and Algorithm for Analyzing Molecular Motion


Cecherini-Silberstein, Francesca

University of Rome

Identification and Characterization of the Minimal Cornserved Structure of HIV-1 Protease and Reverse Transcriptase in the Presence and Absence of Drug Pressure


Heisig, Michael

Universität Heidelberg

Modellierung und Simulation der Diffusion von Xenobiotica durch das Stratum corneum

14/07/2004 Huber, Christian Universität des Saarlandes Flüssigchromatographie-Massenspektrometrie: Herausforderungen an die Datengenerierung und Evaluierung in der Proteomik und Genomik
13/07/2004 Huber, Wolfgang DKFZ Heidelberg Interfering with proteins - statistical challenges of functional cellular assays


Lill, Markus Biographics Lab. 3R, Basel Multidimensional QSAR in Drug Design and Environmental Toxicology
07/07/2004 Freudenberg, Jan Inst. Humangenetik, Bonn Systematic Investigation of Genetic Variability in the Human Genome - Implications for Disease
05/07/2004 Hildebrandt, Andreas Zentrum für Bioinformatik, UdS Improving Solvation Calculations Using Nonlocal Electrostatics
05/07/2004 Geyer, Tihamer Zentrum für Bioinformatik, UdS Interfacing Brownian Dynamics -- A Step towards the "Virtual Bio-Lab"
05/07/2004 Böckmann, Rainer Dept. of Biochemistry, University of Zurich A theoretical Investigation of Membrane Proteins and their Environment


Dr. Klaus Dreisewerd Universität Münster Prozesse und Potentiale der MALDI-MS mit gepulsten Infrarot-Lasern
27/05/2004 Meiler, Jens University of Washington De Novo Protein Stucture Prediction
25/05/2004 Beissbarth, Tim Wehi Bioinf. Parkville, Austr. Making Sense of Large Biological Datasets
24/05/2004 Beissbarth, Tim Wehi Bioinf. Parkville, Austr. Issues about SAGE: Sequencing Error Correction and Gene Identification
14/05/2004 Wen-Guey Wu Tsing Hua University, Taiwan How Protein-carbohydrate Interactions Promote Protein-lipid Interaction: A Lesson from Snake Venom Research
11/05/2004 Tsuda, Koji Universität Tübingen Learning Kernels from Biological Networks by Maximizing Entropy
27/04/2004 Wingender, Edgar Universität Göttingen Integrative Modeling of and Predictions on Regulatory Networks
15/03/2004 Thiele, Herbert Fa. Bruker, Hamburg Bioinformatik und Massenspektrometrie in der Proteomik
18/02/2004 Vert, Jean Philippe Ecole des Mines, Paris Extracting pathways activity from gene expression data
17/02/2004 Selbig, Joachim MPI Golm Mutual Information-based Bioinformatics Approaches
18/12/2003 Rahmann, Sven MPI Molecular Genetics, Berlin Dynamic Programming Algorithms for Two Statistical Problems in Computational Biology
17/12/2003 Krause, Roland Cellzome AG, Heidelberg Bioinformatic Analysis of Protein Complexes in Saccharomyces Cerevisae for the Identification of Medical Drug Targets
17/12/2003 Rehmsmeier, Marc Bioinf. School Bielefeld Genome-Wide Prediction of Polycomb/Trithorax; Response Elements in Drosophila Melanogaster
16/12/2003 Prlic, Andreas Universität Salzburg Prospects and Challenges of Protein Structure Bioinformatics
10/12/2003 Beerenwinkel, Niko MPI Informatik Computational Methods for the Analysis of HIV Drug Resistance Data
10/12/2003 Winn, Peter EMBL Heidelberg Structure Function Relationships in Cytochromes P450 and the Ubiquitination Pathway


Prof. Andreas Gombert University of Sao Paulo, Brasilien; University of Minho, Braga, Portuga The Yeast Kluyveromyces marxianus as a Cell Factory


Prof. Dr. Georg Sprenger Institut für Mikrobiologie der Universität
Metabolic engineering mit Escherichia coli: Gewinnung von L-Phenylalanin und anderen Chorismat-Derivaten
08/10/2003 Heil, Burkhard Universität Bonn Bioinformatical recognition of Potassium-channel sequences
26/09/2003 Dunbrack, Roland Inst. F. Cancer Res. Philadelphia Improving comparative modeling: benchmarks, algorithms and scoring functions
11/09/2003 Weskamp, Nils Universität Marburg Efficient Similarity Search in Protein Structure Databases: Improving Clique-Detection through Clique Hashing
31/07/2003 Gösling, Astrid    
30/07/2003 Koch, Kerstin   Statistical analysis of amino acid side chain flexibility for 1:n protein protein docking
22/07/2003 Ben-Hur, Asa Stanford University Remote Homology Detection: A Motif Based Approach
17/07/2003 von Öhsen, Nik FhG-Scai Protein Structure Prediction: Improving Domain Identification within the ARBY Server
16/07/2003 Prof. Dr. Wolf-Dieter Lehmann Zentrale Spektroskopie, DFKZ, Heidelberg The Use of Accurate Mass Data for Peptide Sequencing and Recognition of Covalently Modified Peptides by Mass Spectrometry
15/07/2003 Weigand, Stephan Bayer AG, Abt. Pharma Kombinatorische Chemie in der Pharma Forschung: Wunsch und Wirklichkeit
08/07/2003 Konermann, Lars Univ. of Western Ontario Protein Folding and Conformational Dynamichs: What Can Mass Spectrometry Experiments Tell Us?
18/06/2003 Kececioglu, John University of Arizona Reconstructing a history of recombinations from a set of sequences
18/06/2003 Steck, Harald MIT Recovery of Regulatory Networks from High-Throughput data
12/06/2003 Zimmermann, Marc FhG-Scai Extracting knowledge from High-Throughput Screening Data: Towards the Generation of Biosphere Models
04/06/2003 Elofsson, Arne Stockholm Bioinformatics Center Improved automatic fold recognition using pcons, proq and pmodeller
02/06/2003 Gastreich, Markus BiosolveIT -
22/05/2003 Walter, Hauke University of Erlangen HIV drug resistance and viral fitness
08/05/2003 Tramontano, Anna University of Rome Hepatitis C Virus Proteins as Targets for Drug Development: The role of Bioinformatics and Modelling
28/04/2003 Claussen, Holger BiosolveIT Protein Flexibility and Database Interface - current developments around FlexX
07/04/2003 Yeang, Chen-Hsiang MIT Physical Network Models and Multi-source Data integration
12/02/2003 Lin, Chi-Jen University of Taiwan Can SVM be a major classification method? Recent research on SVM model selection
11/02/2003 Lin, Chi-Jen University of Taiwan Can SVM be a major classification method? Recent research on SVM model selection
14/11/2002 Stahl, Martin Hoffmann-La Roche Docking and De Novo Design: How Good are our Predictions?
31/10/2002 Kneuer, Carsten Universität Leipzig Organic anion transporting Polypeptides - Biopharmazeutisch relevante Transportproteine
30/10/2002 Fuhr, Günter R. IMBT St. Ingbert Offene Fragen der Zellbiologie mit Bezug zur Biotechnologie